In this work we study the well-posedness, the control and the stabilization of some fluid flow models. First, we focus on the 1D compressible Navier-Stokes equations. Under a geometric assumption on the flow of the target velocity corresponding to the possibility of emptying the domain under the action of the flow, we prove the local exact boundary controllability to trajectory. The main novelty of this work is that the target trajectory can now depend on time and space. In the second part, we study a model of an immersed boundary in an incompressible viscous fluid in 2D and 3D. Contrary to Peskin's Immersed Boundary Method where the boundary force depends on the elastic properties of the structure and its geometry, we consider that the boundary force is a given data. Two results are established: a local in time existence of strong solutions and an existence of strong solutions for all time with small data. This work is a first step on the mathematical analysis of Peskin's Immersed Boundary Method. Finally, we are interested in the stabilization of the interface between two fluid layers coupled through surface tension effect in 2D and 3D. We prove that the system is exponentially stabilizable at any rate around a flat configuration with fluids at rest using a control of finite dimension acting locally at one fluid boundary. This work is a first step in the study of the stabilization of Rayleigh-Taylor instabilities.